It seems that nlgeo 1 is not implemented for truss element.

Hi Mikael:

After I installed the PETSc, I test the inside examples and it shows ok.

Running test examples to verify correct installation
Using PETSC_DIR=/home/hchen/petsc-3.4.4 and PETSC_ARCH=arch-linux2-c-debug
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI process
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI processes
Fortran example src/snes/examples/tutorials/ex5f run successfully with 1 MPI process
Completed test examples

However when I installed the PETSc, I used the recommended command:

./configure --with-cc=gcc --with-fc=gfortran --download-f-blas-lapack --download-mpich

Probably it means PETSc uses mpich?

And when I compiled oofem in parallel, I use openmpi-1.8 because I did not find the library of mpich.
Is it the possible reason?

When I run

mpirun -np 1 ./oofem

It showed the same:

[hchen:04737] *** Process received signal ***
[hchen:04737] Signal: Segmentation fault (11)
[hchen:04737] Signal code: Address not mapped (1)
[hchen:04737] Failing at address: 0x44000098
[hchen:04737] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36ff0)[0x7f829b915ff0]
[hchen:04737] [ 1] /usr/local/lib/libmpi.so.1(MPI_Comm_rank+0x46)[0x7f829c21a5e6]
[hchen:04737] [ 2] ./oofem(main+0x130)[0x403369]
[hchen:04737] [ 3] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f829b900de5]
[hchen:04737] [ 4] ./oofem[0x403139]
[hchen:04737] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 4737 on node hchen exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------

Hao

Hi:

Thanks guys.

Basically there is no problem with the serial version of oofem.
But when I compile oofem with petsc and openmpi to do the parallel computation, no error in configuration and build I think but all the paratests fail...
Do I misunderstand something or...
The log file of the build is attached.

when type './oofem' it looks like:

[hchen:10378] *** Process received signal ***
[hchen:10378] Signal: Segmentation fault (11)
[hchen:10378] Signal code: Address not mapped (1)
[hchen:10378] Failing at address: 0x44000098
[hchen:10378] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36ff0)[0x7f152010eff0]
[hchen:10378] [ 1] /usr/local/lib/libmpi.so.1(MPI_Comm_rank+0x46)[0x7f1520a135e6]
[hchen:10378] [ 2] ./oofem(main+0x130)[0x403369]
[hchen:10378] [ 3] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f15200f9de5]
[hchen:10378] [ 4] ./oofem[0x403139]
[hchen:10378] *** End of error message ***
Segmentation fault (core dumped)

Hao

Hi:

My linux system does not work so I just reinstall the system.

Then I try again but it is exactly the same problem. In the configuration step it says Doxygen is not found, others are ok.
In the make step I can not see any problem...

So I run the command as Mikael said:

make clean
make VERBOSE=1 > buildlog.txt

The buildlog.txt is attached.

I am wondering if it is due to I do not install some prerequisite softwares?

Thanks!

Hao

Hi Borek:

I got it as:

OOFEM version 2.3 (x86_64-Linux, fm;tm;sm)
of Apr  2 2014 on hchen

Copyright (C) 1994-2014 Borek Patzak
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Does it mean tm has been compiled?

Hao